Is Your Gut Keeping You Up at Night?

The science behind the gut-sleep connection
As a Root Cause & Longevity Specialist, I’ve found that many chronic health issues trace back to one central hub: the gut. This system doesn’t just handle digestion, it is the command centre for everything from immunity to hormones, emotional regulation to detoxification. And yes, even your sleep!
In today’s world, we’re human doings more than human beings. Constantly switched on, overstimulated, under-rested, and over-scheduled. One of the first health pillars to take a hit? Sleep. Sleep is foundational to healing, and yet it often feels elusive.
In my clinic, I hear the same story on repeat: “I’m doing everything right - blue light blockers, bedtime teas, magnesium, melatonin and no scrolling, but I still can’t sleep.” The reality is that even the best sleep hygiene won’t be effective if you haven’t addressed what’s going on in the gut, the real key to restorative, deep sleep. That’s where functional tools like Biomel come in, not as a surface-level fix, but as a powerful way to support gut balance at the root, helping recalibrate the gut-brain-sleep axis from the inside out.
How gut health influences your sleep more than you think
Research into the gut-sleep connection is still emerging, but what we do know is powerful. Your gut microbiome helps regulate your circadian rhythm, produces key sleep-promoting brain chemicals, and communicates with your brain via the vagus nerve, which is a two-way superhighway between your gut and mind. In fact, around 90% of your serotonin, your “happy hormone” and the precursor to melatonin, is produced in the gut.
Gut bacteria also play a key role in producing GABA, your brain’s natural calming neurotransmitter that helps initiate sleep. So, when your microbial diversity is depleted, both your nervous system and your sleep quality can suffer.
The gut-brain axis & the vagus nerve
The vagus nerve is the body’s longest cranial nerve, linking the brain to the major organs, especially the gut. When it’s toned and functioning optimally, it slows your heart rate, deepens your breath, and activates your parasympathetic nervous system (rest and digest mode).
Unfortunately, most people are stuck in sympathetic dominance constantly in fight-or-flight mode. While it’s ideal to spend roughly 80% of our time in parasympathetic (‘rest-and-digest’) mode and 20% in sympathetic, chronic stress flips this dynamic.
In our modern world, conditions often shift to around 70–90% in sympathetic and only 10–30% in parasympathetic, leaving the system stuck in constant alert. This imbalance suppresses vagal tone, disrupts digestion, raises cortisol, and fragments sleep, making winding down feel almost impossible even when one is exhausted.
Why does sleep matter for your gut?
Your gut microbiome houses the trillions of bacteria, fungi, and viruses in your digestive system, which operates on a rhythm, just like you do. When you don’t sleep well, your microbes lose their natural recovery and reset window. This disruption can lead to microbial imbalances, increased inflammation, elevated stress hormones, and digestive discomfort.
And let’s be honest: when we’re tired, our food choices often shift. We reach for quick energy fixes such as more caffeine, more sugar, and more ultra-processed snacks. That means less fibre, fewer nutrients, and even less support for the very microbiome that’s struggling. It becomes a vicious cycle, resulting in a tired body, a tired gut and tired mind.
Signs your gut may be sabotaging your sleep
- Feeling wired at bedtime
- Difficulty falling asleep despite physical fatigue
- Waking frequently in the night
- Teeth grinding (bruxism)
- Vivid or disturbing dream
- Snoring or mouth breathing
- Bloating and digestive discomfort
- Regular diarrhoea or constipation
- Food sensitivities or histamine reactions
- Waking with anxiety or a low mood
If you nodded to more than one, your gut may be waving a big red flag.
Your gut’s night-time ally: Biomel
When I support clients with sleep issues, I always look through a gut-health lens. One of my favourite tools? Biomel.
Biomel’s delicious vegan-friendly gut-health products are formulated with live active cultures, prebiotic fibre, and essential nutrients like vitamin B6, vitamin D, and calcium, all of which support a balanced microbiome and calm nervous system.
My go-to? The dairy-free chocolate gut-health shots.
They contain Bifidobacterium and Lactobacillus strains that have been linked to improved sleep quality and reduced cortisol levels in clinical trials. Plus, they taste like a treat, which is a win! It is often stereotyped in the wellness world that something good for you should taste bad! Biomel has thankfully rewritten that narrative!
Whether you opt for the pre-made drinks or the complete gut nutritional powder, I recommend taking one serving approximately one hour before bed. You’ll nourish your microbiome just before your overnight fast, giving your gut time to work its magic while you rest.
Simple ways to support your gut-sleep connection
1. Establish a microbiome-friendly bedtime ritual
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Try a Biomel shot after dinner and limit screens 1 hour before bed.
2. Stimulate your vagus nerve
- Diaphragmatic breathing, humming, listening to a meditation, and gentle neck massage work wonders.
3. Feed your gut bugs daily
- Fibre-rich foods like leeks, asparagus, and artichokes are gold. Biomel's prebiotic health bars are another tasty option.
4. Avoid common sleep saboteurs
- Late-night alcohol, doom-scrolling, and heavy meals trigger the wrong nervous system mode.
Sleep is a gut-driven process
Healing your sleep isn’t about hacks; it’s about restoring the communication between your gut and brain. Support your gut, tone your vagus nerve, and include tools like Biomel in your evening routine. You’re not just investing in sleep, you’re investing in your longevity, your mental clarity, and your peace.
Because when your gut sleeps well, you do too.
References:
Sleep, circadian rhythm, and gut microbiota: https://pubmed.ncbi.nlm.nih.gov/32668369/
Vagus Nerve and Gut-Brain Communication: https://pubmed.ncbi.nlm.nih.gov/39041416/
Acute Sleep-Wake Cycle Shift Results in Community Alteration of Human Gut Microbiome [The interactions along the microbiota-gut-brain axis in the regulation of circadian rhythms, sleep mechanisms and disorders] https://pubmed.ncbi.nlm.nih.gov/32051239/
The shift work and health research agenda: Considering changes in gut microbiota as a pathway linking shift work, sleep loss and circadian misalignment, and metabolic disease https://pubmed.ncbi.nlm.nih.gov/27568341/
[The interactions along the microbiota-gut-brain axis in the regulation of circadian rhythms, sleep mechanisms and disorders] https://pubmed.ncbi.nlm.nih.gov/38934670/
"Circadian misalignment and the gut microbiome. A bidirectional relationship triggering inflammation and metabolic disorders"- a literature review. https://pubmed.ncbi.nlm.nih.gov/32559717/
The Role of Gut Microbiome in Sleep Quality and Health: Dietary Strategies for Microbiota Support https://pubmed.ncbi.nlm.nih.gov/39064702/
Microbiota and sleep: awakening the gut feeling https://pubmed.ncbi.nlm.nih.gov/34364787/
The interplay between sleep and gut microbiota https://pubmed.ncbi.nlm.nih.gov/35032622/
Gut microbiota changes require vagus nerve integrity to promote depressive-like behaviors in mice https://www.nature.com/articles/s41380-023-02071-6
Vagus nerve stimulation and gut microbiota interactions: A novel therapeutic avenue for neuropsychiatric disorders https://www.sciencedirect.com/science/article/pii/S0149763424004597
Gut microbiota and sleep: Interaction mechanisms and therapeutic prospects
https://pmc.ncbi.nlm.nih.gov/articles/PMC11260001/
Impact of probiotics on sleep quality and mood states in patients with insomnia: a systematic review and meta-analysis https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2025.1596990/full?utm_source=chatgpt.com